PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002891.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 253aa    MW: 26802.8 Da    PI: 7.2501
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002891.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00026082123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C + F ++  L  H++ H
  Itr_sc002891.1_g00001.1 60 FSCNYCQRKFYSSQALGGHQNAH 82
                             89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-65788No hitNo description
PROSITE profilePS5015711.4276087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MENNHEGDDD EVSLDLSLGC RDAAANAAAA ADGLQVTSPL QDVGSDVSES GGGGGDRRVF  60
SCNYCQRKFY SSQALGGHQN AHKRERTMAK RGQRMAAAAA VTAYGYHPAA TAASVPLPLP  120
LHGPYNRSLG IHFHSMIQKP ATYFGAPSPF PGSTQMPSPS IYGYNAWTRR PFDQPPPIGR  180
LAPESYHVGT RLPPSSSSSL PNTAMGRFDM PYRSPTVVDG IGDGYRMDIS GAGAGASSSK  240
SQQEIDLDLS LKL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.18e-32zinc finger protein 3